Electron Microscopy Data Bank

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Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Release date: Dec. 6, 2023
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8jdj
Q-score: 0.594

Zhao X, Ma D, Ishiguro K, Saito H, Akichika S, Matsuzawa I, Mito M, Irie T, Ishibashi K, Wakabayashi K, Sakaguchi Y, Yokoyama T, Mishima Y, Shirouzu M, Iwasaki S, Suzuki T, Suzuki T

Cell (2023) 186 pp. 5517- [ DOI: doi:10.1016/j.cell.2023.10.026 Pubmed: 37992713 ]

EMD-36179

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Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Release date: Dec. 6, 2023
Resolution: 2.26 Å
EM Method: Single-particle
Fitted PDBs: 8jdk
Q-score: 0.577

Zhao X, Ma D, Ishiguro K, Saito H, Akichika S, Matsuzawa I, Mito M, Irie T, Ishibashi K, Wakabayashi K, Sakaguchi Y, Yokoyama T, Mishima Y, Shirouzu M, Iwasaki S, Suzuki T, Suzuki T

Cell (2023) 186 pp. 5517- [ DOI: doi:10.1016/j.cell.2023.10.026 Pubmed: 37992713 ]

EMD-36180

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Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Release date: Dec. 6, 2023
Resolution: 2.42 Å
EM Method: Single-particle
Fitted PDBs: 8jdl
Q-score: 0.573

Zhao X, Ma D, Ishiguro K, Saito H, Akichika S, Matsuzawa I, Mito M, Irie T, Ishibashi K, Wakabayashi K, Sakaguchi Y, Yokoyama T, Mishima Y, Shirouzu M, Iwasaki S, Suzuki T, Suzuki T

Cell (2023) 186 pp. 5517- [ DOI: doi:10.1016/j.cell.2023.10.026 Pubmed: 37992713 ]

EMD-36181

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Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Release date: Dec. 6, 2023
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 8jdm
Q-score: 0.557

Zhao X, Ma D, Ishiguro K, Saito H, Akichika S, Matsuzawa I, Mito M, Irie T, Ishibashi K, Wakabayashi K, Sakaguchi Y, Yokoyama T, Mishima Y, Shirouzu M, Iwasaki S, Suzuki T, Suzuki T

Cell (2023) 186 pp. 5517- [ DOI: doi:10.1016/j.cell.2023.10.026 Pubmed: 37992713 ]

EMD-34588

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Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (3.2 angstrom resolution)

Release date: May 17, 2023
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8hag
Q-score: 0.29

Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T

Nat Commun (2023) 14 pp. 4103-4103 [ Pubmed: 37460559 DOI: doi:10.1038/s41467-023-39735-4 ]

EMD-34589

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Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (3.9 angstrom resolution)

Release date: May 17, 2023
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8hah
Q-score: 0.159

Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T

Nat Commun (2023) 14 pp. 4103-4103 [ Pubmed: 37460559 DOI: doi:10.1038/s41467-023-39735-4 ]

EMD-34591

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Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 1 (4.7 angstrom resolution)

Release date: May 17, 2023
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 8hai
Q-score: 0.212

Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T

Nat Commun (2023) 14 pp. 4103-4103 [ Pubmed: 37460559 DOI: doi:10.1038/s41467-023-39735-4 ]

EMD-34592

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Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 2 (4.8 angstrom resolution)

Release date: May 17, 2023
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 8haj
Q-score: 0.2

Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T

Nat Commun (2023) 14 pp. 4103-4103 [ Pubmed: 37460559 DOI: doi:10.1038/s41467-023-39735-4 ]

EMD-34594

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Cryo-EM structure of the p300 catalytic core bound to the H4K12acK16ac nucleosome, class 4 (4.5 angstrom resolution)

Release date: May 17, 2023
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8hak
Q-score: 0.214

Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T

Nat Commun (2023) 14 pp. 4103-4103 [ Pubmed: 37460559 DOI: doi:10.1038/s41467-023-39735-4 ]

EMD-34595

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Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 1

Release date: May 17, 2023
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8hal
Q-score: 0.195

Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T

Nat Commun (2023) 14 pp. 4103-4103 [ Pubmed: 37460559 DOI: doi:10.1038/s41467-023-39735-4 ]

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